PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK24973.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NF-X1
Protein Properties Length: 882aa    MW: 98761.2 Da    PI: 8.2605
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK24973.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.51.8e-05356375119
    zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                 CG H+C + CH+GpC + C+
  KFK24973.1 356 CGYHRCPERCHRGPCLEtCR 375
                 *****************997 PP

2zf-NF-X118.73.9e-06430454119
    zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                 CG      +HkCq++CH GpC pCp
  KFK24973.1 430 CGkrlrcrNHKCQSPCHQGPCAPCP 454
                 777777779***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359086150IPR019786Zinc finger, PHD-type, conserved site
PfamPF014222.5197214IPR000967Zinc finger, NF-X1-type
SMARTSM004388.1197215IPR000967Zinc finger, NF-X1-type
CDDcd060086.67E-8239287No hitNo description
SMARTSM004380.019249268IPR000967Zinc finger, NF-X1-type
PfamPF014220.044251267IPR000967Zinc finger, NF-X1-type
CDDcd060085.41E-7292332No hitNo description
PfamPF014220.047302320IPR000967Zinc finger, NF-X1-type
SMARTSM004380.014302321IPR000967Zinc finger, NF-X1-type
CDDcd060082.23E-9346395No hitNo description
PfamPF014220.0013356375IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035356376IPR000967Zinc finger, NF-X1-type
CDDcd060081.30E-6399447No hitNo description
PfamPF014220.036409427IPR000967Zinc finger, NF-X1-type
SMARTSM004380.33409428IPR000967Zinc finger, NF-X1-type
CDDcd060085.36E-11426474No hitNo description
PfamPF014226.1E-4430454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034436455IPR000967Zinc finger, NF-X1-type
SMARTSM0043834493514IPR000967Zinc finger, NF-X1-type
PfamPF014224.8503513IPR000967Zinc finger, NF-X1-type
PfamPF01422110522531IPR000967Zinc finger, NF-X1-type
SMARTSM00438130522564IPR000967Zinc finger, NF-X1-type
PfamPF014220.078604615IPR000967Zinc finger, NF-X1-type
SMARTSM004389.6604635IPR000967Zinc finger, NF-X1-type
CDDcd060081.02E-4633674No hitNo description
SMARTSM004380.053645663IPR000967Zinc finger, NF-X1-type
PfamPF014220.097646662IPR000967Zinc finger, NF-X1-type
PfamPF01422160697702IPR000967Zinc finger, NF-X1-type
SMARTSM0043819708737IPR000967Zinc finger, NF-X1-type
PfamPF014225.5710722IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MAGPVTTGDF RWKSPPQPPS LQQTISDSDS DSGSDSDNHH QHRHNDLSNS IFKAYLDCHS  60
SSSPSSIDLA KIQSFLASSS SGAVSCLICL ERIKRTDPTW SCTSLCFAVF HLFCIQSWAR  120
QCLDLQAARA VTRPSSTHTE AELVWNCPKC RSSYGKSEIP RKYLCYCGKE EDPPADNPWI  180
LPHSCGEVCE RALSNNCGHC CLLLCHPGPC ASCPKLVKAK CFCGGVEDVK RCGHKLFSCG  240
NVCNRVLDCE IHECREICHD GECPLCRERA VYRCSCGKVK EEKDCCERVF RCEASCENML  300
NCGKHVCERG CHSGECGLCP FQGKRSCPCG KKFYQGLSCD VAAPLCGGTC DKVLGCGYHR  360
CPERCHRGPC LETCRIVVTK SCRCGGTKKQ VPCHQELACE RRCQRVRDCA RHACRRRCCD  420
GECPPCSEIC GKRLRCRNHK CQSPCHQGPC APCPIMVTIS CACGETHFEV PCGTETNQKP  480
PRCRKLCNIA PLCRHGSIRK PHKCHYGACP PCRLPCDEEY PCGHNCKLRC HGPRPPPNRE  540
FMIKPTKKML NIHPESTPGS PCPRCPELVW RPCVGNHLAA EKMMVCSDRT QFACDNLCGN  600
PLPCGNHYCS FTCHPLDIRS SSLDKRSESC EKCDLRCQKE RTPPCQHPCP RRCHPGDCPP  660
CKTLVKRSCH CGAMVHAFEC IYYNTLSEKD QMKARSCSEP CHRKLPNCTH LCPEICHPGQ  720
CPSPENCGKK VVVRCKCLTL KKEWICQDVQ AAHRAADSDP KDVPKNQFGV GLLPCDSTCK  780
SKLQKAESVL QQRNVKEIEE KEEPSGRNAT KRRKRRERGQ DIKETSRLQK LAVATKKVLM  840
LVMFMAALAA VSYYGYKGLL WLSDWMNEVE EQRQKSRRYP RI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2286900.0AK228690.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL16-04-K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423446.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A087G5210.0A0A087G521_ARAAL; Uncharacterized protein
STRINGfgenesh2_kg.6__500__AT5G05660.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors